| Date | Location | Set | Before | After | Gap |
| 8/30/1997 | Snowmass Village, CO (Snowmass Village) | * | Queen Jane Approximately | Blackbird | 130 |
| 10/25/1997 | New York, NY (Hammerstein Ballroom) | * | Blackbird | This Time Forever | 6 |
| 10/29/1997 | Providence, RI (Lupo's at the Strand) | * | Bombs Away | It's All Over Now | 3 |
| 11/2/1997 | Detroit, MI (Fillmore Detroit) | * | Good Morning Little Schoolgirl | Heaven Help the Fool | 3 |
| 3/14/1998 | Houston, TX (Aerial Theatre) | * | El Paso | Heaven Help the Fool | 16 |
| 11/11/1998 | Lackawana, NY (Sideshow Music Hall) | * | It's All Over Now | The Winners | 35 |
| 11/17/1998 | New York, NY (Hammerstein Ballroom) | * | It's All Over Now | Artificial Flowers | 4 |
| 11/21/1998 | Portland, ME (State Theatre) | * | K.C. Moan | Heaven Help the Fool | 3 |
| 10/27/1999 | San Francisco, CA (The Fillmore) | * | El Paso | She Says | 16 |
| 11/4/1999 | Chicago, IL (Riviera Theatre) | * | Minglewood Blues | Fever | 5 |
| 11/10/1999 | Worcester, MA (The Palladium) | * | Odessa | Fever | 4 |
| 11/22/1999 | Providence, RI (Performing Arts Center) | * | Loose Lucy | K.C. Moan | 8 |
| 11/27/1999 | Raleigh, NC (Disco Rodeo) | * | Me and My Uncle | When I Paint My Masterpiece | 4 |
| 5/31/2000 | Myrtle Beach, SC (House of Blues) | * | Victim or the Crime | Queen Jane Approximately | 17 |
| 6/18/2000 | Hyannis, MA (Cape Cod Melody Tent) | * | Me and My Uncle | Easy to Slip | 6 |
| 10/31/2000 | Denver, CO (Paramount Theatre) | * | Victim or the Crime | The Music Never Stopped | 16 |
| 11/8/2000 | Milwaukee, WI (Riverside Theatre) | * | — | Odessa | 5 |
| 11/11/2000 | Hartford, CT (Webster Theatre) | * | Blackbird | West L.A. Fadeaway | 2 |
| 11/19/2000 | Albany, NY (Palace Theatre) | * | Mexicali Blues | Shakedown Street | 6 |
| 3/27/2001 | St. Louis, MO (Mississippi Nights) | SI | El Paso | Little Red Rooster | 8 |
| 4/3/2001 | Tampa, FL (Tampa Bay Performing Arts Center) | SI | Desolation Row | Greatest Story Ever Told | 5 |
| 4/10/2001 | Knoxville, TN (Tennessee Theatre) | SI | Deep Elem Blues | Bury Me Standing | 5 |
| 4/25/2001 | Portland, OR (Roseland Theatre) | SI | K.C. Moan | The Winners | 10 |
| 6/3/2001 | Santa Cruz, CA (Palookaville) | SI | El Paso | Odessa | 4 |
| 7/17/2001 | Clarkston, MI (DTE Energy Music Theatre) | * | Candyman | Jack Straw | 3 |
| 8/19/2001 | Burlington, VT (Champlain Valley Fairgrounds) | * | Candyman | It's All Over Now | 12 |
| 8/31/2001 | Berkeley, CA (Greek Theatre) | * | Blackbird | Tennessee Jed | 8 |
| 9/28/2001 | Washington, DC (9:30 Club) | SI | Me and My Uncle | Easy to Slip | 8 |
| 12/28/2001 | Anaheim, CA (House of Blues) | SI | Victim or the Crime | Bird Song | 10 |
| 3/1/2002 | Royal Oak, MI (Royal Oak Theatre) | SI | Blackbird | Bombs Away | 11 |
| 3/7/2002 | Boston, MA (Orpheum Theatre) | SII | Mexicali Blues | Jam | 4 |
| 3/14/2002 | Atlanta, GA (The Tabernacle) | SII | Victim or the Crime | Jam | 6 |
| 3/30/2002 | Spokane, WA (The Met) | SII | Victim or the Crime | Walkin Blues | 11 |
| 4/30/2002 | Austin, TX (La Zona Rosa) | SII | Friend of the Devil | Lost Sailor | 5 |
| 5/8/2002 | San Francisco, CA (Slim's) | SII | Mexicali Blues | Lost Sailor | 5 |
| 5/29/2002 | Geneva, NY (Smith Opera House) | SII | Me and My Uncle | Saint of Circumstance Jam | 10 |
| 6/28/2002 | Newcastle, England (Newcastle Opera House) | SII | Odessa | Ramble On Rose | 1 |
| 7/10/2002 | Amsterdam, The Netherlands (Melkweg) | SII | Blackbird | The Last Time | 9 |
| 7/31/2002 | Binghamton, NY (Anderson Center for the Arts) | * | Victim or the Crime | Shakedown Street | 12 |
| 9/19/2002 | Minneapolis, MN (First Avenue) | SII | Friend of the Devil | Cassidy | 8 |
| 9/27/2002 | Philadelphia, PA (Electric Factory) | SII | — | Mississippi Half-Step | 6 |
| 10/12/2002 | Hampton Beach, NH (Casino Ballroom) | SII | The Winners | I Need a Miracle | 11 |
| 2/8/2003 | San Diego, CA (4th and B) | SII | Friend of the Devil | Help on the Way | 8 |
| 4/19/2003 | Pompano Beach, FL (Pompano Beach Amphitheatre) | SI | Friend of the Devil | Jam | 5 |
| 5/1/2003 | Winston-Salem, NC (Ziggy's) | SI | Mexicali Blues | Bird Song Jam | 9 |
| 5/10/2003 | Houston, TX (Numbers) | SII | Me and My Uncle | Ramble On Rose | 6 |
| 8/27/2003 | Manchester, England (Life Cafe) | SII | Bury Me Standing | Good Morning Little Schoolgirl | 11 |
| 10/14/2003 | Raleigh, NC (Disco Rodeo) | SII | The Winners | Sitting in Limbo | 4 |
| 10/24/2003 | New York, NY (Beacon Theatre) | SII | El Paso | Even So | 7 |
| 11/4/2003 | Chicago, IL (Vic Theatre) | SII | City Girls | Mississippi Half-Step | 8 |
| 11/13/2003 | West Des Moines, IA (Val Air Ballroom) | SII | Jam | Deep Elem Blues | 6 |
| 2/28/2004 | Phoenix, AZ (Celebrity Theatre) | SII | Friend of the Devil | Ashes and Glass | 11 |
| 3/9/2004 | Spokane, WA (Big Easy Concert House) | SII | Bombs Away | Mississippi Half-Step | 7 |
| 3/19/2004 | Rochester, NY (Rochester Auditorium Theatre) | * | Victim or the Crime | Jam | 6 |
| 3/31/2004 | Washington, DC (9:30 Club) | SII | — | Corrina | 9 |
| 2/5/2005 | Phoenix, AZ (Celebrity Theatre) | SII | K.C. Moan | Dark Star | 9 |
| 3/28/2005 | Minneapolis, MN (Pantages Theatre) | SII | Blackbird | Corrina | 3 |
| 4/8/2005 | Verona, NY (Turning Stone Casino) | SII | Odessa | Even So | 8 |
| 4/30/2005 | Philadelphia, PA (Electric Factory) | SII | The Winners | Tomorrow Never Knows | 16 |
| 5/4/2005 | * New York, NY (VH1 Studios) * | * | Lazy River Road | Truckin | - |
| 8/7/2005 | Charlottesville, VA (Charlottesville Pavilion) | SII | Victim or the Crime | Even So | 9 |
| 8/28/2005 | Syracuse, NY (New York State Fair) | * | Althea | Good Morning Little Schoolgirl | 7 |
| 10/29/2005 | Buffalo, NY (Town Ballroom) | SII | The Winners | La Grange Jam | 10 |
| 11/14/2005 | Asheville, NC (Orange Peel) | SII | Masters of War | Mississippi Half-Step | 11 |
| 12/14/2005 | Reno, NV (Hilton Theatre) | SII | Corrina | Weather Report Suite Prelude/P | 15 |
| 3/18/2006 | Norfolk, VA (The NorVa) | SII | El Paso | Tomorrow Never Knows | 8 |
| 4/1/2006 | Boston, MA (Orpheum Theatre) | SII | — | A Hard Rain's A-Gonna Fall | 10 |
| 6/26/2006 | Alpine, CA (Viejas Casino Outlet Ctr Park) | * | K.C. Moan | Bury Me Standing | 9 |
| 8/24/2006 | Hampton Beach, NH (Casino Ballroom) | SII | Jack-A-Roe | All Along the Watchtower | 18 |
| 10/30/2006 | Geneva, NY (Smith Opera House) | SII | Tuesday Blues | Picasso Moon | 10 |
| 2/18/2007 | Vancouver, BC (Commodore Ballroom) | SII | Candyman | China Cat Sunflower | 22 |
| 3/10/2007 | New York, NY (Beacon Theatre) | SII | Friend of the Devil | Quinn the Eskimo | 7 |
| 7/28/2007 | Los Angeles, CA (Greek Theatre) | SII | Masters of War | Althea | 29 |
| 8/15/2007 | Burgettstown, PA (Star Lake Amphitheatre) | * | Peggy-O | Jus' Like Mama Said | 4 |
| 10/28/2007 | Lebanon, NH (Lebanon Opera House) | SII | Me and Bobby McGee | I Need a Miracle | 8 |
| 3/29/2008 | Syracuse, NY (Landmark Theatre) | SII | El Paso | Jus' Like Mama Said | 22 |
| 6/29/2008 | Los Angeles, CA (Greek Theatre) | * | Bertha | Friend of the Devil | 18 |
| 8/27/2008 | Clarkston, MI (Pine Knob Music Theatre) | * | Dark Hollow | Lost Sailor | 18 |
| 10/31/2008 | Westbury, NY (NYCB Theatre at Westbury) | SII | Catfish John | Silvio | 4 |
| 7/15/2009 | Jim Thorpe, PA (Penn's Peak) | SII | When I Paint My Masterpiece | Lady with a Fan | 26 |
| 8/23/2009 | Seattle, WA (Paramount Theatre) | SII | Victim or the Crime | Shade of Grey | 10 |
| 10/24/2009 | New York, NY (Beacon Theatre) | SII | Friend of the Devil | It Must Have Been the Roses | 17 |
| 1/24/2010 | Negril, Jamaica (Grand Lido Negril Resort & Spa) | SI | Greatest Story Ever Told | Walk in the Sunshine | 1 |
| 2/17/2014 | Washington, DC (Lincoln Theatre) | SII | — | Artificial Flowers | 11 |
| 2/28/2014 | Burlington, VT (Flynn Theatre) | SII | Artificial Flowers | A Hard Rain's A-Gonna Fall | 8 |
| 3/10/2014 | St. Louis, MO (The Pageant) | SII | Me and Bobby McGee | Odessa | 7 |
| 6/7/2014 | Hyannis, MA (Cape Cod Melody Tent) | SII | El Paso | Estimated Prophet | 8 |