| Date | Location | Set | Before | After | Gap |
| 11/19/1999 | Philadelphia, PA (Electric Factory) | * | Blackbird | El Paso | 231 |
| 11/27/1999 | Raleigh, NC (Disco Rodeo) | * | Odessa | Black-Throated Wind | 6 |
| 5/28/2000 | Little Rock, AR (Riverfest) | * | Bombs Away | Friend of the Devil | 15 |
| 6/3/2000 | Raleigh, NC (Disco Rodeo) | * | Bird Song | Friend of the Devil | 4 |
| 6/18/2000 | Hyannis, MA (Cape Cod Melody Tent) | * | K.C. Moan | Black-Throated Wind | 4 |
| 7/22/2000 | Fort Collins, CO (Aggie Theatre) | * | K.C. Moan | Victim or the Crime | 6 |
| 10/22/2000 | San Francisco, CA (The Fillmore) | * | Festival | When I Paint My Masterpiece | 5 |
| 10/31/2000 | Denver, CO (Paramount Theatre) | * | — | Victim or the Crime | 5 |
| 11/9/2000 | Akron, OH (Akron Civic Theatre) | * | — | Victim or the Crime | 6 |
| 11/18/2000 | New York, NY (Hammerstein Ballroom) | * | — | City Girls | 6 |
| 11/28/2000 | Washington, DC (9:30 Club) | * | — | K.C. Moan | 5 |
| 3/28/2001 | Nashville, TN (Ryman Auditorium) | SI | Odessa | Friend of the Devil | 5 |
| 4/4/2001 | Pompano Beach, FL (Pompano Beach Amphitheatre) | SI | Festival | Bury Me Standing | 5 |
| 4/14/2001 | Royal Oak, MI (Royal Oak Theatre) | SI | Dark Star | Corrina | 7 |
| 4/22/2001 | Bozeman, MT (Emerson Cultural Center Theatre) | SI | Odessa | Victim or the Crime | 5 |
| 4/26/2001 | Portland, OR (Roseland Theatre) | SI | Easy to Slip | Friend of the Devil | 3 |
| 5/4/2001 | San Francisco, CA (The Warfield) | SI | New Speedway Boogie | Odessa | 1 |
| 7/10/2001 | Maryland Heights, MO (Riverport Amphitheatre) | * | Odessa | Bury Me Standing | 4 |
| 7/22/2001 | Saratoga Springs, NY (Saratoga Performing Arts Center) | * | Blackbird | Friend of the Devil | 5 |
| 8/14/2001 | Baltimore, MD (Pier Six Concert Pavilion) | * | Loose Lucy | October Queen | 4 |
| 8/18/2001 | Camden, NJ (Susquehanna Bank Center) | * | Minglewood Blues | Loser | 3 |
| 8/24/2001 | East Troy, WI (Alpine Valley Music Theatre) | * | Loser | When I Paint My Masterpiece | 5 |
| 9/2/2001 | Seattle, WA (Bumbershoot Festival) | * | Easy Answers | Looks Like Rain | 5 |
| 9/28/2001 | Washington, DC (9:30 Club) | SI | Youngblood | Black-Throated Wind | 7 |
| 10/4/2001 | Hampton Beach, NH (Casino Ballroom) | SI | K.C. Moan | Looks Like Rain | 4 |
| 12/26/2001 | Las Vegas, NV (House of Blues) | SI | Odessa | Friend of the Devil | 4 |
| 2/4/2002 | Orlando, FL (Hard Rock Live) | SI | Victim or the Crime | Friend of the Devil | 7 |
| 2/28/2002 | Kalamazoo, MI (Kalamazoo State Theatre) | SI | Twilight Time | Looks Like Rain | 5 |
| 3/10/2002 | Scranton, PA (Cultural Center) | SII | Blackbird | When I Paint My Masterpiece | 8 |
| 3/29/2002 | Boise, ID (Knitting Factory) | SII | The Winners | Cold Rain and Snow | 13 |
| 4/30/2002 | Austin, TX (La Zona Rosa) | SII | — | Friend of the Devil | 6 |
| 5/9/2002 | San Francisco, CA (Slim's) | SII | — | Odessa | 6 |
| 5/29/2002 | Geneva, NY (Smith Opera House) | SII | Candyman | Black-Throated Wind | 9 |
| 6/28/2002 | Newcastle, England (Newcastle Opera House) | SII | — | Odessa | 1 |
| 7/6/2002 | Paris, France (New Morning) | SII | K.C. Moan | Fever | 6 |
| 7/18/2002 | Alsfeld, Germany (Burg Herzberg Festival) | * | — | Friend of the Devil | 7 |
| 7/23/2002 | Portsmouth, VA (Harbor Center) | * | — | Victim or the Crime | 2 |
| 7/30/2002 | Wilmington, DE (Kahunaville) | * | — | Candyman | 5 |
| 9/22/2002 | South Bend, IN (Morris Performing Arts Center) | SII | K.C. Moan | Love Supreme Jam | 12 |
| 10/5/2002 | New York, NY (Beacon Theatre) | SII | — | Corrina | 9 |
| 10/12/2002 | Hampton Beach, NH (Casino Ballroom) | SII | — | The Winners | 5 |
| 10/19/2002 | Milwaukee, WI (The Rave) | SI | Good Morning Little Schoolgirl | Odessa | 5 |
| 2/9/2003 | Anaheim, CA (House of Blues) | SII | — | Candyman | 4 |
| 4/19/2003 | Pompano Beach, FL (Pompano Beach Amphitheatre) | SI | Me and Bobby McGee | Friend of the Devil | 4 |
| 4/26/2003 | Charlotte, NC (CityFest Live) | * | — | Friend of the Devil | 5 |
| 5/3/2003 | Memphis, TN (Beale Street Music Festival) | * | Me and Bobby McGee | Candyman | 5 |
| 5/10/2003 | Houston, TX (Numbers) | SII | — | Black-Throated Wind | 5 |
| 8/22/2003 | London, England (London Astoria) | SII | K.C. Moan | When I Paint My Masterpiece | 7 |
| 9/6/2003 | San Rafael, CA (Marin Civic Center Lagoon Park) | * | Me and Bobby McGee | Dark Star (Instrumental) | 5 |
| 10/16/2003 | Philadelphia, PA (Electric Factory) | SII | — | Candyman | 4 |
| 10/26/2003 | Poughkeepsie, NY (Bardavon 1869 Opera House) | SII | K.C. Moan | Tennessee Jed | 8 |
| 11/3/2003 | Chicago, IL (Vic Theatre) | SII | — | The Winners | 5 |
| 11/14/2003 | DeKalb, IL (Convocation Center) | SII | — | Victim or the Crime | 8 |
| 2/25/2004 | Las Vegas, NV (House of Blues) | SII | Blackbird | Looks Like Rain | 8 |
| 3/19/2004 | Rochester, NY (Rochester Auditorium Theatre) | * | Jam | Victim or the Crime | 15 |
| 3/23/2004 | Burlington, VT (Burlington Memorial Auditorium) | SI | K.C. Moan | When I Paint My Masterpiece | 3 |
| 3/27/2004 | Jim Thorpe, PA (Penn's Peak) | SII | Jam | City Girls | 3 |
| 4/2/2004 | Worcester, MA (The Palladium) | SII | Jam | Jam | 4 |
| 9/15/2004 | Tulsa, OK (Cain's Ballroom) | SII | Candyman | Take Me to the River | 4 |
| 3/29/2005 | Madison, WI (Orpheum Theatre) | SII | Me and Bobby McGee | Lazy River Road | 8 |
| 4/5/2005 | Cleveland, OH (House of Blues) | SII | City Girls | I Need a Miracle | 5 |
| 4/23/2005 | Boston, MA (Orpheum Theatre) | * | Iko Iko | Friend of the Devil | 13 |
| 5/1/2005 | Johnson City, NY (Magic City Music Hall) | SII | — | Corrina | 6 |
| 6/8/2005 | Covington, KY (Madison Theater) | SII | Artificial Flowers | When I Paint My Masterpiece | 2 |
| 9/1/2005 | New York, NY (Central Park Summerstage) | * | Slipknot! | Corrina | 15 |
| 10/28/2005 | Erie, PA (Warner Theatre) | SII | Bury Me Standing | When I Paint My Masterpiece | 7 |
| 11/8/2005 | Frederick, MD (Weinberg Center for the Arts) | SII | Twilight Time | The Winners | 8 |
| 11/16/2005 | Atlanta, GA (Variety Playhouse) | SII | — | When I Paint My Masterpiece | 6 |
| 12/13/2005 | San Francisco, CA (Grand Ballroom) | SII | — | Peggy-O | 12 |
| 2/3/2006 | Sovereign of the Seas, Caribbean Sea (Dave Matthews Cruise) | SI | Blackbird | Bird Song | 5 |
| 3/24/2006 | Philadelphia, PA (Electric Factory) | SII | K.C. Moan | When I Paint My Masterpiece | 8 |
| 3/31/2006 | Hampton Beach, NH (Casino Ballroom) | SII | El Paso | Even So | 5 |
| 7/4/2006 | Oklahoma City, OK (Zoo Amphitheatre) | * | Me and Bobby McGee | West L.A. Fadeaway | 15 |
| 8/22/2006 | Ridgefield, CT (Ridgefield Playhouse) | SII | — | Deep Elem Blues | 12 |
| 10/26/2006 | Columbus, OH (LC Pavilion) | SII | — | Desolation Row | 8 |
| 11/4/2006 | Utica, NY (Stanley Theatre) | SII | — | Candyman | 7 |
| 11/17/2006 | St. Petersburg, FL (Jannus Landing) | SII | Blackbird | Masters of War | 9 |
| 2/16/2007 | Portland, OR (Roseland Theatre) | SII | Blackbird | Victim or the Crime | 7 |
| 3/4/2007 | Greensburg, PA (Palace Theatre) | SII | Jam | Desolation Row | 5 |
| 3/13/2007 | Boston, MA (Orpheum Theatre) | SII | K.C. Moan | Victim or the Crime | 6 |
| 6/14/2007 | * New York, NY (Canal Room) * | * | Lucky Enough | Desolation Row | - |
| 7/13/2007 | Masontown, WV (Marvin's Mountaintop) | SII | Lazy River Road | Tennessee Jed | 17 |
| 7/24/2007 | Morrison, CO (Red Rocks Amphitheatre) | SII | — | Victim or the Crime | 7 |
| 8/11/2007 | Bridgeport, CT (Seaside Park) | SII | — | A Hard Rain's A-Gonna Fall | 4 |
| 8/17/2007 | Camden, NJ (Susquehanna Bank Center) | * | Masters of War | Quinn the Eskimo | 4 |
| 8/21/2007 | Wantagh, NY (Jones Beach Amphitheatre) | * | Eyes of the World | Friend of the Devil | 3 |
| 11/4/2007 | University Park, PA (Eisenhower Auditorium) | SII | K.C. Moan | Looks Like Rain | 9 |
| 11/16/2007 | Orlando, FL (House of Blues) | SII | Been All Around this World | The Weight | 8 |
| 3/21/2008 | St. Paul, MN (The O'Shaughnessy) | SII | Dark Hollow | Corrina | 3 |
| 3/30/2008 | Upper Darby, PA (Tower Theater) | SII | Jack-A-Roe | Jam | 7 |
| 5/17/2008 | * Mill Valley, CA (142 Throckmorton Theatre) * | SII | Mexicali Blues | El Paso | - |
| 6/23/2008 | Boise, ID (Idaho Botanical Garden) | * | When I Paint My Masterpiece | Cream Puff War | 13 |
| 7/9/2008 | San Jose, CA (Center for the Performing Arts) | * | Peggy-O | Truckin | 10 |
| 11/6/2008 | Washington, DC (Warner Theatre) | SII | — | A Hard Rain's A-Gonna Fall | 20 |
| 11/16/2008 | Greensboro, NC (War Memorial Auditorium) | SII | Peggy-O | Quinn the Eskimo | 7 |
| 11/22/2008 | Boca Raton, FL (Mizner Park Amphitheatre) | SII | Candyman | When I Paint My Masterpiece | 4 |
| 7/18/2009 | Atlanta, GA (Masquerade Music Park) | SII | — | Corrina | 13 |
| 7/24/2009 | Hampton Beach, NH (Casino Ballroom) | SII | — | Desolation Row | 4 |
| 8/22/2009 | Eugene, OR (Cuthbert Amphitheatre) | * | Two Djinn | A Hard Rain's A-Gonna Fall | 3 |
| 9/6/2009 | Pozo, CA (Pozo Saloon) | SII | Youngblood | He's Gone | 11 |
| 10/23/2009 | New York, NY (Beacon Theatre) | SII | — | Bury Me Standing | 6 |
| 1/28/2010 | * Negril, Jamaica (Grand Lido Negril Resort & Spa) * | SI | Fever | Josephine | - |
| 2/18/2014 | Washington, DC (Lincoln Theatre) | SII | — | Mexicali Blues | 14 |
| 3/5/2014 | Detroit, MI (State Theatre) | SII | Walkin Blues | Friend of the Devil | 11 |
| 3/10/2014 | St. Louis, MO (The Pageant) | SII | — | Me and Bobby McGee | 3 |
| 6/6/2014 | Hunter, NY (Hunter Mountain) | SI | Don't Let Go | Deal | 7 |
| 7/6/2014 | San Diego, CA (Humphrey's Concerts by the Bay) | SII | — | Mexicali Blues | 10 |